Containers¶
Here is a table of the containers currently available in: /shared/container_repository/explorer
Software Name |
Description |
Version(s) |
|---|---|---|
afni |
Analysis of Functional NeuroImages - neuroimaging analysis software |
24.3.06 |
angsd suite |
Analysis of Next Generation Sequencing Data - Includes angsd, pcangsd, ngsRelate, and ngsadmix |
0.940 |
delft3d |
3D numerical modeling suite for hydrodynamics, sediment transport and morphology |
6.04.00, 6.04.99_dev |
freesurfer |
Software suite for processing and analyzing brain MRI images |
8.0.0 |
fsl |
FMRIB Software Library - comprehensive library of analysis tools for brain imaging data |
6.0.1, 6.0.3, 6.0.7 |
galaxy-upload |
Galaxy platform upload tools for genomic data analysis |
1.0.1 |
gatk |
Genome Analysis Toolkit - variant discovery in high-throughput sequencing data |
4.6.1.0 |
multiqc |
Aggregate results from bioinformatics analyses across many samples |
1.26 |
phpmyadmin |
Web interface for MySQL and MariaDB database administration |
5.1.1, 5.2.1 |
Integrated development environment for R programming and data science |
4.4.0, 4.4.2 |
|
salmon |
Fast and accurate quantification of transcript expression from RNA-seq data |
1.10.3 |
Spliced Transcripts Alignment to a Reference - RNA-seq aligner |
2.7.10b |
|
tensorboard |
TensorFlow’s visualization toolkit for machine learning experiments |
2.18.0 |
trinityrnaseq |
De novo transcript sequence reconstruction from RNA-Seq data |
2.15.2 |
trinotateweb |
Web interface for Trinotate functional annotation of transcriptomes |
v3.2.2 |
yasara |
Molecular modeling and simulation software for proteins and other biomolecules |
21.12.19 |